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Low-carb chicken enchiladas with almond flour tortillas and Greek yogurt sauce

Low Carb Chicken Enchiladas (High Protein & Gluten-Free)

Jyoti Behrani
These high-protein, low-carb chicken enchiladas are made with almond flour tortillas and a creamy filling for a lighter twist. Packed with lean protein and bold enchilada flavor, they're satisfying, wholesome, and perfect for a healthy weeknight dinner.
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Prep Time 20 minutes
Cook Time 20 minutes
Total Time 40 minutes
Course Dinner
Cuisine Mexican
Servings 6
Calories 222 kcal

Ingredients
  

For the Chicken Filling

  • 1 lb cooked chicken breast ,shredded (rotisserie or poached)
  • 1 teaspoon olive oil
  • ½ small onion ,finely diced
  • 1 jalapeno ,de-seeded, finely chopped (optional)
  • 2 cloves garlic ,minced
  • 1 teaspoon ground cumin
  • 1 teaspoon chili powder
  • ½ teaspoon smoked paprika
  • ½ teaspoon dried oregano
  • Salt & black pepper ,to taste
  • ¼ cup low-carb enchilada sauce ,or sugar-free store-bought

For the Enchiladas

  • 6 almond flour tortillas (6-7 inch)
  • ¾ cup low-carb enchilada sauce ,divided
  • 1 cup reduced-fat shredded Mexican blend cheese ,or part-skim mozzarella + cheddar mix; plus more for the topping
  • 2 tablespoon fat free cream cheese
  • ¼ cup chopped bell peppers or zucchini optional

For Greek Yogurt Sauce: (optional, replace sour cream)

  • ¼ cup Greek Yogurt ,blended smooth
  • 1 lime juice , to taste
  • salt to taste

Toppings (optional):

  • Fresh cilantro ,pickled jalapeno, or green onions

Instructions
 

  • Preheat oven to 375°F (190°C). Lightly grease a small baking dish (8×8 works great).

Make the filling:

  • Heat olive oil in a skillet over medium heat. Sauté onion for 2–3 minutes until soft. Add garlic and cook 30 seconds.
  • Stir in cumin, chili powder, paprika, oregano, salt, and pepper. Add shredded chicken and mix well.
  • Turn heat to low. Stir in cream cheese and ¼ cup enchilada sauce until creamy. Remove from heat.

Assemble the Enchiladas:

  • Warm almond flour tortillas slightly on a skillet (or microwave 10-15 seconds so they don't crack).
  • Lightly grease a baking dish and spread a thin layer of enchilada sauce on the bottom.
  • Lay one almond flour tortilla flat, spread 1-2 tablespoons of enchilada sauce evenly over the tortilla.
  • Fill each tortilla with about ⅓ cup chicken mixture, sprinkle with a little cheese, roll tightly, and place seam-side down in the dish.

Bake:

  • Pour remaining ½ cup enchilada sauce over the tortillas. Sprinkle evenly with remaining cheese.
  • Bake uncovered for 18-22 minutes, until bubbly and lightly golden.
  • Rest 5 minutes, then garnish with cilantro, green onions, or a dollop of Greek yogurt sauce.
  • (Optional) In a small bowl, whisk together Greek yogurt, fresh lime juice, and a pinch of salt until smooth and creamy. Use this mixture in place of sour cream and serve alongside the enchiladas.

Notes

  • Sour Cream Substitute: Greek yogurt mixed with lime juice and salt gives the same tangy, creamy finish with extra protein and fewer carbs.
  • Chicken Options: Use rotisserie chicken breast, leftover grilled chicken, or shredded chicken.
  • Tortillas: Warm almond flour tortillas slightly before filling to prevent cracking.
  • Cheese: Reduced-fat cheese keeps the dish lighter, but full-fat works if preferred.
  • Make It Spicy: Add chopped jalapenos or a pinch of cayenne to the chicken mixture.
  • Serving Tip: Serve with extra yogurt-lime sauce and pico-de-gallo on the side.

Nutrition

Nutrition Facts
Low Carb Chicken Enchiladas (High Protein & Gluten-Free)
Amount per Serving
Calories
222
% Daily Value*
Fat
 
7
g
11
%
Saturated Fat
 
3
g
19
%
Polyunsaturated Fat
 
1
g
Monounsaturated Fat
 
2
g
Cholesterol
 
77
mg
26
%
Sodium
 
606
mg
26
%
Potassium
 
282
mg
8
%
Carbohydrates
 
7
g
2
%
Fiber
 
1
g
4
%
Sugar
 
4
g
4
%
Protein
 
31
g
62
%
Vitamin A
 
611
IU
12
%
Vitamin C
 
6
mg
7
%
Calcium
 
269
mg
27
%
Iron
 
2
mg
11
%
* Percent Daily Values are based on a 2000 calorie diet.

Disclaimer

Nutrition values are my best estimates. If you rely on them for your diet, use your preferred nutrition calculator.

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